Spaces:
Runtime error
Runtime error
File size: 3,337 Bytes
cc034ee |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 |
"""Tests for risk aggregation utilities."""
import pytest
from sentinel.models import RiskScore
from sentinel.risk_aggregation import (
format_scores_for_llm,
format_scores_for_pdf,
group_scores_by_cancer_type,
)
def test_group_scores_by_cancer_type():
"""Test grouping risk scores by cancer type."""
scores = [
RiskScore(
name="Gail Model",
score="5%",
cancer_type="Breast Cancer",
description="5-year risk",
),
RiskScore(
name="Claus Model",
score="3%",
cancer_type="Breast Cancer",
description="Lifetime risk",
),
RiskScore(
name="PLCOm2012",
score="2%",
cancer_type="Lung Cancer",
description="6-year risk",
),
]
grouped = group_scores_by_cancer_type(scores)
assert len(grouped) == 2
assert "Breast Cancer" in grouped
assert "Lung Cancer" in grouped
assert len(grouped["Breast Cancer"]) == 2
assert len(grouped["Lung Cancer"]) == 1
assert grouped["Breast Cancer"][0].name == "Gail Model"
assert grouped["Breast Cancer"][1].name == "Claus Model"
def test_group_scores_empty():
"""Test grouping with empty list."""
grouped = group_scores_by_cancer_type([])
assert grouped == {}
def test_group_scores_no_cancer_type():
"""Test grouping with scores that have no cancer type."""
scores = [
RiskScore(name="Test Model", score="5%", cancer_type=None),
]
with pytest.raises(ValueError, match=r"Test Model.*missing cancer_type"):
group_scores_by_cancer_type(scores)
def test_format_scores_for_llm():
"""Test formatting scores for LLM context."""
scores = [
RiskScore(
name="Gail Model",
score="5%",
cancer_type="Breast Cancer",
description="5-year risk",
interpretation="Low to moderate risk",
references=["Gail et al., 1989"],
),
]
grouped = group_scores_by_cancer_type(scores)
formatted = format_scores_for_llm(grouped)
assert "# Calculated Risk Scores (Ground Truth)" in formatted
assert "Breast Cancer" in formatted
assert "Gail Model" in formatted
assert "5%" in formatted
assert "5-year risk" in formatted
assert "Low to moderate risk" in formatted
assert "Gail et al., 1989" in formatted
assert "DO NOT generate your own risk levels" in formatted
def test_format_scores_for_llm_empty():
"""Test formatting empty scores for LLM."""
formatted = format_scores_for_llm({})
assert formatted == "No risk scores calculated."
def test_format_scores_for_pdf():
"""Test formatting scores for PDF presentation."""
scores = [
RiskScore(
name="Gail Model",
score="5%",
cancer_type="Breast Cancer",
),
RiskScore(
name="PLCOm2012",
score="2%",
cancer_type="Lung Cancer",
),
]
grouped = group_scores_by_cancer_type(scores)
formatted = format_scores_for_pdf(grouped)
assert len(formatted) == 2
assert formatted[0][0] == "Breast Cancer"
assert formatted[1][0] == "Lung Cancer"
assert len(formatted[0][1]) == 1
assert len(formatted[1][1]) == 1
|