seqid
stringclasses 705
values | source
stringclasses 9
values | type
stringclasses 73
values | start
int64 1
249M
| end
int64 61
249M
| score
stringlengths 1
7
| strand
stringclasses 3
values | phase
stringclasses 4
values | attributes
stringlengths 52
3.21k
|
|---|---|---|---|---|---|---|---|---|
NC_000001.11
|
RefSeq
|
region
| 1
| 248,956,422
|
.
|
+
|
.
|
{"ID": "NC_000001.11:1..248956422", "Dbxref": "taxon:9606", "Name": "1", "chromosome": "1", "gbkey": "Src", "genome": "chromosome", "mol_type": "genomic DNA"}
|
NC_000001.11
|
BestRefSeq
|
pseudogene
| 11,874
| 14,409
|
.
|
+
|
.
|
{"ID": "gene-DDX11L1", "Dbxref": ["GeneID:100287102", "HGNC:HGNC:37102"], "Name": "DDX11L1", "description": "DEAD/H-box helicase 11 like 1 (pseudogene)", "gbkey": "Gene", "gene": "DDX11L1", "gene_biotype": "transcribed_pseudogene", "pseudo": "true"}
|
NC_000001.11
|
BestRefSeq
|
transcript
| 11,874
| 14,409
|
.
|
+
|
.
|
{"ID": "rna-NR_046018.2", "Parent": "gene-DDX11L1", "Dbxref": ["GeneID:100287102", "GenBank:NR_046018.2", "HGNC:HGNC:37102"], "Name": "NR_046018.2", "gbkey": "misc_RNA", "gene": "DDX11L1", "product": "DEAD/H-box helicase 11 like 1 (pseudogene)", "pseudo": "true", "transcript_id": "NR_046018.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 11,874
| 12,227
|
.
|
+
|
.
|
{"ID": "exon-NR_046018.2-1", "Parent": "rna-NR_046018.2", "Dbxref": ["GeneID:100287102", "GenBank:NR_046018.2", "HGNC:HGNC:37102"], "gbkey": "misc_RNA", "gene": "DDX11L1", "product": "DEAD/H-box helicase 11 like 1 (pseudogene)", "pseudo": "true", "transcript_id": "NR_046018.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 12,613
| 12,721
|
.
|
+
|
.
|
{"ID": "exon-NR_046018.2-2", "Parent": "rna-NR_046018.2", "Dbxref": ["GeneID:100287102", "GenBank:NR_046018.2", "HGNC:HGNC:37102"], "gbkey": "misc_RNA", "gene": "DDX11L1", "product": "DEAD/H-box helicase 11 like 1 (pseudogene)", "pseudo": "true", "transcript_id": "NR_046018.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 13,221
| 14,409
|
.
|
+
|
.
|
{"ID": "exon-NR_046018.2-3", "Parent": "rna-NR_046018.2", "Dbxref": ["GeneID:100287102", "GenBank:NR_046018.2", "HGNC:HGNC:37102"], "gbkey": "misc_RNA", "gene": "DDX11L1", "product": "DEAD/H-box helicase 11 like 1 (pseudogene)", "pseudo": "true", "transcript_id": "NR_046018.2"}
|
NC_000001.11
|
BestRefSeq
|
pseudogene
| 14,362
| 29,370
|
.
|
-
|
.
|
{"ID": "gene-WASH7P", "Dbxref": ["GeneID:653635", "HGNC:HGNC:38034"], "Name": "WASH7P", "description": "WASP family homolog 7%2C pseudogene", "gbkey": "Gene", "gene": "WASH7P", "gene_biotype": "transcribed_pseudogene", "gene_synonym": ["FAM39F", "WASH5P"], "pseudo": "true"}
|
NC_000001.11
|
BestRefSeq
|
transcript
| 14,362
| 29,370
|
.
|
-
|
.
|
{"ID": "rna-NR_024540.1", "Parent": "gene-WASH7P", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "Name": "NR_024540.1", "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 29,321
| 29,370
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-1", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 24,738
| 24,891
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-2", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 18,268
| 18,366
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-3", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,915
| 18,061
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-4", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,606
| 17,742
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-5", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,233
| 17,368
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-6", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 16,858
| 17,055
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-7", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 16,607
| 16,765
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-8", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 15,796
| 15,947
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-9", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 14,970
| 15,038
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-10", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 14,362
| 14,829
|
.
|
-
|
.
|
{"ID": "exon-NR_024540.1-11", "Parent": "rna-NR_024540.1", "Dbxref": ["GeneID:653635", "GenBank:NR_024540.1", "HGNC:HGNC:38034"], "gbkey": "misc_RNA", "gene": "WASH7P", "product": "WASP family homolog 7%2C pseudogene", "pseudo": "true", "transcript_id": "NR_024540.1"}
|
NC_000001.11
|
BestRefSeq
|
gene
| 17,369
| 17,436
|
.
|
-
|
.
|
{"ID": "gene-MIR6859-1", "Dbxref": ["GeneID:102466751", "HGNC:HGNC:50039", "miRBase:MI0022705"], "Name": "MIR6859-1", "description": "microRNA 6859-1", "gbkey": "Gene", "gene": "MIR6859-1", "gene_biotype": "miRNA", "gene_synonym": "hsa-mir-6859-1"}
|
NC_000001.11
|
BestRefSeq
|
primary_transcript
| 17,369
| 17,436
|
.
|
-
|
.
|
{"ID": "rna-NR_106918.1", "Parent": "gene-MIR6859-1", "Dbxref": ["GeneID:102466751", "GenBank:NR_106918.1", "HGNC:HGNC:50039", "miRBase:MI0022705"], "Name": "NR_106918.1", "gbkey": "precursor_RNA", "gene": "MIR6859-1", "product": "microRNA 6859-1", "transcript_id": "NR_106918.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,369
| 17,436
|
.
|
-
|
.
|
{"ID": "exon-NR_106918.1-1", "Parent": "rna-NR_106918.1", "Dbxref": ["GeneID:102466751", "GenBank:NR_106918.1", "HGNC:HGNC:50039", "miRBase:MI0022705"], "gbkey": "precursor_RNA", "gene": "MIR6859-1", "product": "microRNA 6859-1", "transcript_id": "NR_106918.1"}
|
NC_000001.11
|
BestRefSeq
|
miRNA
| 17,369
| 17,391
|
.
|
-
|
.
|
{"ID": "rna-MIR6859-1", "Parent": "rna-NR_106918.1", "Dbxref": ["GeneID:102466751", "miRBase:MIMAT0027619", "HGNC:HGNC:50039", "miRBase:MI0022705"], "gbkey": "ncRNA", "gene": "MIR6859-1", "product": "hsa-miR-6859-3p"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,369
| 17,391
|
.
|
-
|
.
|
{"ID": "exon-MIR6859-1-1", "Parent": "rna-MIR6859-1", "Dbxref": ["GeneID:102466751", "miRBase:MIMAT0027619", "HGNC:HGNC:50039", "miRBase:MI0022705"], "gbkey": "ncRNA", "gene": "MIR6859-1", "product": "hsa-miR-6859-3p"}
|
NC_000001.11
|
BestRefSeq
|
miRNA
| 17,409
| 17,431
|
.
|
-
|
.
|
{"ID": "rna-MIR6859-1-2", "Parent": "rna-NR_106918.1", "Dbxref": ["GeneID:102466751", "miRBase:MIMAT0027618", "HGNC:HGNC:50039", "miRBase:MI0022705"], "gbkey": "ncRNA", "gene": "MIR6859-1", "product": "hsa-miR-6859-5p"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 17,409
| 17,431
|
.
|
-
|
.
|
{"ID": "exon-MIR6859-1-2-1", "Parent": "rna-MIR6859-1-2", "Dbxref": ["GeneID:102466751", "miRBase:MIMAT0027618", "HGNC:HGNC:50039", "miRBase:MI0022705"], "gbkey": "ncRNA", "gene": "MIR6859-1", "product": "hsa-miR-6859-5p"}
|
NC_000001.11
|
RefSeqFE
|
enhancer
| 20,498
| 21,346
|
.
|
.
|
.
|
{"ID": "id-GeneID:127898558", "Dbxref": "GeneID:127898558", "Note": "H3K4me1 hESC enhancer chr1:20498-21346 (GRCh37/hg19 assembly coordinates)", "experiment": "EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:30033119]", "function": "activates a minimal SCP1%2C AML or CMV promoter by ChIP-STARR-seq in primed H9 embryonic stem cells {active_cell/tissue: H9 hESC(primed)}", "gbkey": "regulatory", "regulatory_class": "enhancer"}
|
NC_000001.11
|
RefSeqFE
|
biological_region
| 20,498
| 21,346
|
.
|
+
|
.
|
{"ID": "id-GeneID:127898558-2", "Dbxref": "GeneID:127898558", "Name": "biological region", "gbkey": "Region", "standard_name": "H3K4me1 hESC enhancer GRCh37_chr1:20498-21346"}
|
NC_000001.11
|
Gnomon
|
gene
| 29,774
| 35,418
|
.
|
+
|
.
|
{"ID": "gene-MIR1302-2HG", "Dbxref": ["GeneID:107985730", "HGNC:HGNC:52482"], "Name": "MIR1302-2HG", "description": "MIR1302-2 host gene", "gbkey": "Gene", "gene": "MIR1302-2HG", "gene_biotype": "lncRNA"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 29,774
| 35,418
|
.
|
+
|
.
|
{"ID": "rna-XR_007065314.1", "Parent": "gene-MIR1302-2HG", "Dbxref": ["GeneID:107985730", "GenBank:XR_007065314.1", "HGNC:HGNC:52482"], "Name": "XR_007065314.1", "gbkey": "ncRNA", "gene": "MIR1302-2HG", "model_evidence": "Supporting evidence includes similarity to: 1 mRNA%2C 5 ESTs%2C 10 long SRA reads%2C and 96%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 4 samples with support for all annotated introns", "product": "MIR1302-2 host gene", "transcript_id": "XR_007065314.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 29,774
| 30,667
|
.
|
+
|
.
|
{"ID": "exon-XR_007065314.1-1", "Parent": "rna-XR_007065314.1", "Dbxref": ["GeneID:107985730", "GenBank:XR_007065314.1", "HGNC:HGNC:52482"], "gbkey": "ncRNA", "gene": "MIR1302-2HG", "product": "MIR1302-2 host gene", "transcript_id": "XR_007065314.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 30,976
| 31,093
|
.
|
+
|
.
|
{"ID": "exon-XR_007065314.1-2", "Parent": "rna-XR_007065314.1", "Dbxref": ["GeneID:107985730", "GenBank:XR_007065314.1", "HGNC:HGNC:52482"], "gbkey": "ncRNA", "gene": "MIR1302-2HG", "product": "MIR1302-2 host gene", "transcript_id": "XR_007065314.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 34,168
| 35,418
|
.
|
+
|
.
|
{"ID": "exon-XR_007065314.1-3", "Parent": "rna-XR_007065314.1", "Dbxref": ["GeneID:107985730", "GenBank:XR_007065314.1", "HGNC:HGNC:52482"], "gbkey": "ncRNA", "gene": "MIR1302-2HG", "product": "MIR1302-2 host gene", "transcript_id": "XR_007065314.1"}
|
NC_000001.11
|
BestRefSeq
|
gene
| 30,366
| 30,503
|
.
|
+
|
.
|
{"ID": "gene-MIR1302-2", "Dbxref": ["GeneID:100302278", "HGNC:HGNC:35294", "miRBase:MI0006363"], "Name": "MIR1302-2", "description": "microRNA 1302-2", "gbkey": "Gene", "gene": "MIR1302-2", "gene_biotype": "miRNA", "gene_synonym": ["hsa-mir-1302-2", "MIRN1302-2"]}
|
NC_000001.11
|
BestRefSeq
|
primary_transcript
| 30,366
| 30,503
|
.
|
+
|
.
|
{"ID": "rna-NR_036051.1", "Parent": "gene-MIR1302-2", "Dbxref": ["GeneID:100302278", "GenBank:NR_036051.1", "HGNC:HGNC:35294", "miRBase:MI0006363"], "Name": "NR_036051.1", "gbkey": "precursor_RNA", "gene": "MIR1302-2", "product": "microRNA 1302-2", "transcript_id": "NR_036051.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 30,366
| 30,503
|
.
|
+
|
.
|
{"ID": "exon-NR_036051.1-1", "Parent": "rna-NR_036051.1", "Dbxref": ["GeneID:100302278", "GenBank:NR_036051.1", "HGNC:HGNC:35294", "miRBase:MI0006363"], "gbkey": "precursor_RNA", "gene": "MIR1302-2", "product": "microRNA 1302-2", "transcript_id": "NR_036051.1"}
|
NC_000001.11
|
BestRefSeq
|
miRNA
| 30,438
| 30,458
|
.
|
+
|
.
|
{"ID": "rna-MIR1302-2", "Parent": "rna-NR_036051.1", "Dbxref": ["GeneID:100302278", "miRBase:MIMAT0005890", "HGNC:HGNC:35294", "miRBase:MI0006363"], "gbkey": "ncRNA", "gene": "MIR1302-2", "product": "hsa-miR-1302"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 30,438
| 30,458
|
.
|
+
|
.
|
{"ID": "exon-MIR1302-2-1", "Parent": "rna-MIR1302-2", "Dbxref": ["GeneID:100302278", "miRBase:MIMAT0005890", "HGNC:HGNC:35294", "miRBase:MI0006363"], "gbkey": "ncRNA", "gene": "MIR1302-2", "product": "hsa-miR-1302"}
|
NC_000001.11
|
BestRefSeq
|
gene
| 34,611
| 36,081
|
.
|
-
|
.
|
{"ID": "gene-FAM138A", "Dbxref": ["GeneID:645520", "HGNC:HGNC:32334"], "Name": "FAM138A", "description": "family with sequence similarity 138 member A", "gbkey": "Gene", "gene": "FAM138A", "gene_biotype": "lncRNA", "gene_synonym": ["F379", "FAM138F"]}
|
NC_000001.11
|
BestRefSeq
|
lnc_RNA
| 34,611
| 36,081
|
.
|
-
|
.
|
{"ID": "rna-NR_026818.1", "Parent": "gene-FAM138A", "Dbxref": ["GeneID:645520", "GenBank:NR_026818.1", "HGNC:HGNC:32334"], "Name": "NR_026818.1", "gbkey": "ncRNA", "gene": "FAM138A", "product": "family with sequence similarity 138 member A", "transcript_id": "NR_026818.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 35,721
| 36,081
|
.
|
-
|
.
|
{"ID": "exon-NR_026818.1-1", "Parent": "rna-NR_026818.1", "Dbxref": ["GeneID:645520", "GenBank:NR_026818.1", "HGNC:HGNC:32334"], "gbkey": "ncRNA", "gene": "FAM138A", "product": "family with sequence similarity 138 member A", "transcript_id": "NR_026818.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 35,277
| 35,481
|
.
|
-
|
.
|
{"ID": "exon-NR_026818.1-2", "Parent": "rna-NR_026818.1", "Dbxref": ["GeneID:645520", "GenBank:NR_026818.1", "HGNC:HGNC:32334"], "gbkey": "ncRNA", "gene": "FAM138A", "product": "family with sequence similarity 138 member A", "transcript_id": "NR_026818.1"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 34,611
| 35,174
|
.
|
-
|
.
|
{"ID": "exon-NR_026818.1-3", "Parent": "rna-NR_026818.1", "Dbxref": ["GeneID:645520", "GenBank:NR_026818.1", "HGNC:HGNC:32334"], "gbkey": "ncRNA", "gene": "FAM138A", "product": "family with sequence similarity 138 member A", "transcript_id": "NR_026818.1"}
|
NC_000001.11
|
Curated Genomic
|
pseudogene
| 52,453
| 53,396
|
.
|
+
|
.
|
{"ID": "gene-OR4G4P", "Dbxref": ["GeneID:79504", "HGNC:HGNC:14822"], "Name": "OR4G4P", "description": "olfactory receptor family 4 subfamily G member 4 pseudogene", "gbkey": "Gene", "gene": "OR4G4P", "gene_biotype": "pseudogene", "pseudo": "true"}
|
NC_000001.11
|
Curated Genomic
|
pseudogene
| 63,016
| 63,885
|
.
|
+
|
.
|
{"ID": "gene-OR4G11P", "Dbxref": ["GeneID:403263", "HGNC:HGNC:31276"], "Name": "OR4G11P", "description": "olfactory receptor family 4 subfamily G member 11 pseudogene", "gbkey": "Gene", "gene": "OR4G11P", "gene_biotype": "pseudogene", "pseudo": "true"}
|
NC_000001.11
|
BestRefSeq
|
gene
| 65,419
| 71,585
|
.
|
+
|
.
|
{"ID": "gene-OR4F5", "Dbxref": ["GeneID:79501", "HGNC:HGNC:14825"], "Name": "OR4F5", "description": "olfactory receptor family 4 subfamily F member 5", "gbkey": "Gene", "gene": "OR4F5", "gene_biotype": "protein_coding"}
|
NC_000001.11
|
BestRefSeq
|
mRNA
| 65,419
| 71,585
|
.
|
+
|
.
|
{"ID": "rna-NM_001005484.2", "Parent": "gene-OR4F5", "Dbxref": ["Ensembl:ENST00000641515.2", "GeneID:79501", "GenBank:NM_001005484.2", "HGNC:HGNC:14825"], "Name": "NM_001005484.2", "gbkey": "mRNA", "gene": "OR4F5", "product": "olfactory receptor family 4 subfamily F member 5", "tag": "MANE Select", "transcript_id": "NM_001005484.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 65,419
| 65,433
|
.
|
+
|
.
|
{"ID": "exon-NM_001005484.2-1", "Parent": "rna-NM_001005484.2", "Dbxref": ["Ensembl:ENST00000641515.2", "GeneID:79501", "GenBank:NM_001005484.2", "HGNC:HGNC:14825"], "gbkey": "mRNA", "gene": "OR4F5", "product": "olfactory receptor family 4 subfamily F member 5", "tag": "MANE Select", "transcript_id": "NM_001005484.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 65,520
| 65,573
|
.
|
+
|
.
|
{"ID": "exon-NM_001005484.2-2", "Parent": "rna-NM_001005484.2", "Dbxref": ["Ensembl:ENST00000641515.2", "GeneID:79501", "GenBank:NM_001005484.2", "HGNC:HGNC:14825"], "gbkey": "mRNA", "gene": "OR4F5", "product": "olfactory receptor family 4 subfamily F member 5", "tag": "MANE Select", "transcript_id": "NM_001005484.2"}
|
NC_000001.11
|
BestRefSeq
|
exon
| 69,037
| 71,585
|
.
|
+
|
.
|
{"ID": "exon-NM_001005484.2-3", "Parent": "rna-NM_001005484.2", "Dbxref": ["Ensembl:ENST00000641515.2", "GeneID:79501", "GenBank:NM_001005484.2", "HGNC:HGNC:14825"], "gbkey": "mRNA", "gene": "OR4F5", "product": "olfactory receptor family 4 subfamily F member 5", "tag": "MANE Select", "transcript_id": "NM_001005484.2"}
|
NC_000001.11
|
BestRefSeq
|
CDS
| 65,565
| 65,573
|
.
|
+
|
0
|
{"ID": "cds-NP_001005484.2", "Parent": "rna-NM_001005484.2", "Dbxref": ["CCDS:CCDS30547.2", "Ensembl:ENSP00000493376.2", "GeneID:79501", "GenBank:NP_001005484.2", "HGNC:HGNC:14825"], "Name": "NP_001005484.2", "gbkey": "CDS", "gene": "OR4F5", "product": "olfactory receptor 4F5", "protein_id": "NP_001005484.2", "tag": "MANE Select"}
|
NC_000001.11
|
BestRefSeq
|
CDS
| 69,037
| 70,008
|
.
|
+
|
0
|
{"ID": "cds-NP_001005484.2", "Parent": "rna-NM_001005484.2", "Dbxref": ["CCDS:CCDS30547.2", "Ensembl:ENSP00000493376.2", "GeneID:79501", "GenBank:NP_001005484.2", "HGNC:HGNC:14825"], "Name": "NP_001005484.2", "gbkey": "CDS", "gene": "OR4F5", "product": "olfactory receptor 4F5", "protein_id": "NP_001005484.2", "tag": "MANE Select"}
|
NC_000001.11
|
Gnomon
|
gene
| 95,222
| 107,727
|
.
|
+
|
.
|
{"ID": "gene-LOC124903816", "Dbxref": "GeneID:124903816", "Name": "LOC124903816", "description": "uncharacterized LOC124903816", "gbkey": "Gene", "gene": "LOC124903816", "gene_biotype": "lncRNA"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 95,222
| 107,727
|
.
|
+
|
.
|
{"ID": "rna-XR_007065337.1", "Parent": "gene-LOC124903816", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065337.1"], "Name": "XR_007065337.1", "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "model_evidence": "Supporting evidence includes similarity to: 1 EST%2C 8 long SRA reads%2C and 84%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 2 samples with support for all annotated introns", "product": "uncharacterized LOC124903816%2C transcript variant X1", "transcript_id": "XR_007065337.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 95,222
| 99,719
|
.
|
+
|
.
|
{"ID": "exon-XR_007065337.1-1", "Parent": "rna-XR_007065337.1", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065337.1"], "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "product": "uncharacterized LOC124903816%2C transcript variant X1", "transcript_id": "XR_007065337.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 106,636
| 107,727
|
.
|
+
|
.
|
{"ID": "exon-XR_007065337.1-2", "Parent": "rna-XR_007065337.1", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065337.1"], "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "product": "uncharacterized LOC124903816%2C transcript variant X1", "transcript_id": "XR_007065337.1"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 95,222
| 107,727
|
.
|
+
|
.
|
{"ID": "rna-XR_007065338.1", "Parent": "gene-LOC124903816", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065338.1"], "Name": "XR_007065338.1", "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "model_evidence": "Supporting evidence includes similarity to: 1 EST%2C 8 long SRA reads%2C and 84%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 2 samples with support for all annotated introns", "product": "uncharacterized LOC124903816%2C transcript variant X2", "transcript_id": "XR_007065338.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 95,222
| 99,719
|
.
|
+
|
.
|
{"ID": "exon-XR_007065338.1-1", "Parent": "rna-XR_007065338.1", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065338.1"], "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "product": "uncharacterized LOC124903816%2C transcript variant X2", "transcript_id": "XR_007065338.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 106,636
| 106,742
|
.
|
+
|
.
|
{"ID": "exon-XR_007065338.1-2", "Parent": "rna-XR_007065338.1", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065338.1"], "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "product": "uncharacterized LOC124903816%2C transcript variant X2", "transcript_id": "XR_007065338.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 106,954
| 107,727
|
.
|
+
|
.
|
{"ID": "exon-XR_007065338.1-3", "Parent": "rna-XR_007065338.1", "Dbxref": ["GeneID:124903816", "GenBank:XR_007065338.1"], "experiment": "COORDINATES: polyA evidence [ECO:0006239]", "gbkey": "ncRNA", "gene": "LOC124903816", "product": "uncharacterized LOC124903816%2C transcript variant X2", "transcript_id": "XR_007065338.1"}
|
NC_000001.11
|
Gnomon
|
gene
| 120,849
| 175,246
|
.
|
-
|
.
|
{"ID": "gene-LOC124900384", "Dbxref": "GeneID:124900384", "Name": "LOC124900384", "description": "uncharacterized LOC124900384", "gbkey": "Gene", "gene": "LOC124900384", "gene_biotype": "lncRNA"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 120,849
| 175,246
|
.
|
-
|
.
|
{"ID": "rna-XR_001737579.3", "Parent": "gene-LOC124900384", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "Name": "XR_001737579.3", "gbkey": "ncRNA", "gene": "LOC124900384", "model_evidence": "Supporting evidence includes similarity to: 5 long SRA reads%2C and 78%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 34 samples with support for all annotated introns", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 173,753
| 175,246
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-1", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 172,557
| 172,688
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-2", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 169,049
| 169,264
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-3", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 168,100
| 168,165
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-4", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 165,884
| 165,942
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-5", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
exon
| 120,849
| 120,932
|
.
|
-
|
.
|
{"ID": "exon-XR_001737579.3-6", "Parent": "rna-XR_001737579.3", "Dbxref": ["GeneID:124900384", "GenBank:XR_001737579.3"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X13", "transcript_id": "XR_001737579.3"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 146,300
| 175,246
|
.
|
-
|
.
|
{"ID": "rna-XR_007065328.1", "Parent": "gene-LOC124900384", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "Name": "XR_007065328.1", "gbkey": "ncRNA", "gene": "LOC124900384", "model_evidence": "Supporting evidence includes similarity to: 4 ESTs%2C 24 long SRA reads%2C and 76%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 19 samples with support for all annotated introns", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 173,753
| 175,246
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-1", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 172,557
| 172,688
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-2", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 169,049
| 169,264
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-3", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 168,100
| 168,165
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-4", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 165,884
| 165,942
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-5", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 164,263
| 164,791
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-6", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 158,593
| 158,674
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-7", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 155,767
| 155,831
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-8", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 146,300
| 146,339
|
.
|
-
|
.
|
{"ID": "exon-XR_007065328.1-9", "Parent": "rna-XR_007065328.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065328.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X9", "transcript_id": "XR_007065328.1"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 146,301
| 175,246
|
.
|
-
|
.
|
{"ID": "rna-XR_007065325.1", "Parent": "gene-LOC124900384", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "Name": "XR_007065325.1", "gbkey": "ncRNA", "gene": "LOC124900384", "model_evidence": "Supporting evidence includes similarity to: 4 ESTs%2C 25 long SRA reads%2C and 78%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 14 samples with support for all annotated introns", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 173,753
| 175,246
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-1", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 172,557
| 172,688
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-2", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 169,049
| 169,264
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-3", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 168,100
| 168,165
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-4", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 165,884
| 165,942
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-5", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 164,263
| 164,791
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-6", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 158,593
| 158,674
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-7", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 155,767
| 155,831
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-8", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 153,354
| 153,543
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-9", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 146,301
| 146,339
|
.
|
-
|
.
|
{"ID": "exon-XR_007065325.1-10", "Parent": "rna-XR_007065325.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065325.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X6", "transcript_id": "XR_007065325.1"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 146,435
| 175,246
|
.
|
-
|
.
|
{"ID": "rna-XR_007065330.1", "Parent": "gene-LOC124900384", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "Name": "XR_007065330.1", "gbkey": "ncRNA", "gene": "LOC124900384", "model_evidence": "Supporting evidence includes similarity to: 1 EST%2C 25 long SRA reads%2C and 75%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 58 samples with support for all annotated introns", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 173,753
| 175,246
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-1", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 172,557
| 172,688
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-2", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 169,049
| 169,264
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-3", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 168,100
| 168,165
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-4", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 165,884
| 165,942
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-5", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 164,263
| 164,791
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-6", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 155,767
| 155,831
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-7", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 146,435
| 146,509
|
.
|
-
|
.
|
{"ID": "exon-XR_007065330.1-8", "Parent": "rna-XR_007065330.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065330.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X11", "transcript_id": "XR_007065330.1"}
|
NC_000001.11
|
Gnomon
|
lnc_RNA
| 146,470
| 175,246
|
.
|
-
|
.
|
{"ID": "rna-XR_007065322.1", "Parent": "gene-LOC124900384", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065322.1"], "Name": "XR_007065322.1", "gbkey": "ncRNA", "gene": "LOC124900384", "model_evidence": "Supporting evidence includes similarity to: 4 ESTs%2C 24 long SRA reads%2C and 76%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 43 samples with support for all annotated introns", "product": "uncharacterized LOC124900384%2C transcript variant X3", "transcript_id": "XR_007065322.1"}
|
NC_000001.11
|
Gnomon
|
exon
| 173,753
| 175,246
|
.
|
-
|
.
|
{"ID": "exon-XR_007065322.1-1", "Parent": "rna-XR_007065322.1", "Dbxref": ["GeneID:124900384", "GenBank:XR_007065322.1"], "gbkey": "ncRNA", "gene": "LOC124900384", "product": "uncharacterized LOC124900384%2C transcript variant X3", "transcript_id": "XR_007065322.1"}
|
End of preview. Expand
in Data Studio
Dataset Summary
This dataset is a processed, tabular representation of the NCBI RefSeq GFF file for the human reference genome GRCh38.p14. The original GFF (General Feature Format) data, GCF_000001405.40_GRCh38.p14_genomic.gff, has been converted to the Parquet format for efficient storage and fast querying using libraries like Pandas and Apache Arrow.
The data contains annotations for all genomic features (genes, transcripts, exons, CDS, etc.) on the primary sequences of the GRCh38 human genome assembly.
Data Structure
The dataset is stored as a single Parquet file and can be easily loaded into a Pandas DataFrame.
| Column Name | Data Type | Description | Example Value |
|---|---|---|---|
seqid |
string | NCBI Accession ID for the sequence (chromosome). Needs mapping to chrX names. |
NC_000001.11 |
source |
string | Source of the feature (e.g., RefSeq, BestRefSeq). | BestRefSeq |
type |
string | Type of the genomic feature (e.g., gene, transcript, exon, CDS). |
gene |
start |
int32 | Feature start position (1-based, inclusive). | 11874 |
end |
int32 | Feature end position (1-based, inclusive). | 14409 |
score |
string | Score (always .) |
. |
strand |
string | Feature strand (+ for forward, - for reverse). |
+ |
phase |
string | Phase for CDS features (0, 1, or 2). | . |
attributes |
string | Feature attributes, stored as a JSON string/dictionary. | {"ID": "gene-DDX11L1", "Dbxref": ["GeneID:100287102", "HGNC:HGNC:37102"]...} |
Usage
1. Python (Pandas) Setup
To easily convert the seqid (NCBI Accession ID) to the standard chromosome name (chr1, chr2, etc.), you can use the following mapping dictionary extracted from the GRCh38.p14 assembly report.
ncid2chr = {
'NC_000001.11': 'chr1', 'NC_000002.12': 'chr2', 'NC_000003.12': 'chr3',
'NC_000004.12': 'chr4', 'NC_000005.10': 'chr5', 'NC_000006.12': 'chr6',
'NC_000007.14': 'chr7', 'NC_000008.11': 'chr8', 'NC_000009.12': 'chr9',
'NC_000010.11': 'chr10', 'NC_000011.10': 'chr11', 'NC_000012.12': 'chr12',
'NC_000013.11': 'chr13', 'NC_000014.9': 'chr14', 'NC_000015.10': 'chr15',
'NC_000016.10': 'chr16', 'NC_000017.11': 'chr17', 'NC_000018.10': 'chr18',
'NC_000019.10': 'chr19', 'NC_000020.11': 'chr20', 'NC_000021.9': 'chr21',
'NC_000022.11': 'chr22', 'NC_000023.11': 'chrX', 'NC_000024.10': 'chrY',
'NC_012920.1': 'chrM'
}
- Downloads last month
- 4